Hi Dave,
Unless you have glass fibers from the matting showing through and no resin coat left at all, you will be fine. If we're talking of the usual crazing then it'll be safe to use paint stripper providing you go about it sensibly, which of course you are doing. If it's any help, I've done exactly the same things on crazing without problem. The resin is fairly resistant; if there are large amounts of filler then that can react badly, but of course you'd want to get rid of filler anyway....
As a bit more encouragement, back in the day when people paid me to attend work (rather than paying me a pension to stay away
) we had several GRP storages on site. Some of these were old and had crazing similar to what we see on our cars and yes, if the crazing was internal then we would find structural deterioration in those areas.
But the key thing is that they were exposed to chemicals 24/7 and normally for continuous periods of two or more years. So the time for attack was massively more than you get from what you're doing. If you use something like a methylene chloride stripper which is known to be aggressive towards polyesters then you have to be careful, but even so it's hours rather than minutes for any significant damage. If you did use chemicals as aggressive as MC then you'd get the message very quickly once you saw the paint lifting itself off the car !
Brian