I'm not convinced about the long stainless flex idea. I'm thinking they may be problematic with vibration and would need to be positively located/supported at the collector end.
Agree with JB - welding cast is said to be tricky, but if you're confident, why not try the cut 'n' shut idea and weld on a flange?
That presumes the twin down pipes will then fit. I think I asked this previously, so will they fit?
If not, I suppose the next step is to make new down pipes.
At some point, I reckon most folk come to the conclusion that fabricating the whole thing is the better way to go. It's not a difficult job (I've made several), but is time consuming.