Bench bleeding properly primes the cylinder and purges all the air out. What little air that may get back in is then much easier to bleed out. I use rubber plugs after bench bleeding, and I let the unions "flow" a bit before snugging them up. When bleeding the system, I start at the master cylinder outlet. When we changed master cylinders, ones that bypassed, often that is all that would be required.
Bench bleeding will require a reservoir hooked to the m/c inlet and then a pipe from the m/c outlet back into the reservoir.